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国際学会口頭発表,国際学会ポスター,招待講演

2016

  • Akifumi Nishida, Ryoji Sekine, Daisuke Kiga, and Masayuki Yamamura (Full paper, oral)
    "High-frequency noise attenuation of a two-component system responding to short-pulse input"
    (Proc. of The 7th international conference on Computational Systems-Biology and Bioinformatics (CSBio2016), pp. 28-35, Macao, December, 2016)

2014

  • Ken Komiya, Erimi Harada and Masayuki Yamamura (Poster)
    "A Sequential DNA Generation Circuit for Directing DNA Nanomachines"
    (Proc. of 20th International Meeting on DNA Computing and Molecular Programming (DNA20), pp. 64, Kyoto, September 2014)
  • Takefumi Moriya, Masayuki Yamamura, Daisuke Kiga (Full paper, oral)
    "Effects of downstream genes on synthetic genetic circuits"
    (The International Conference on Bioinformatics, Sydney, Australia, 2014)
    (BMC Systems Biology, 2014 Dec 8;8 Suppl 4:S4.)

2013

  • Takashi Kitajima, Ken Komiya, Masayuki Hayakawa, Masahiro Takinoue and Masayuki Yamamura (Poster)
    "Construction of a DNA-based stimuli-responsive microhydrogel"
    (Proc. of 19th International Meeting on DNA Computing and Molecular Programming (DNA19), pp. 83, Tempe, September 2013)

2012

  • Ryoji Sekine, Akifumi Nishida, Masayuki Yamamura
    "Engineering of synthetic genetic circuits,"
    (6th International Workshop on Natural Computing, Tokyo, Japan, March, 2012)
  • Ryoji Sekine, Takashi Hata, Daisuke Kiga
    "A repeat of the synthetic diversification by periodic dilution,"
    (CSH Asia Meeting Synthetic Biology, Suzhou, China, November, 2012)

2011

  • Ken Komiya, Asako Kobayashi and Masayuki Yamamura (Poster)
    "Construction of a DNA Generation circuit for sequential control of nanomachines"
    (Proc. of 17th International Meeting on DNA Computing and Molecular Programming (DNA17), pp. 48, Pasadena, September 2011)
  • Ryo Hirose, Satoshi Kobayashi, and Ken Komiya (Full paper, oral)
    "DNA Logic Circuits with a DNA Polymerase and a Nicking Enzyme"
    (Proc. of the 2011 International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA’11), pp. 713-719, Las Vegas, July 2011)
  • Ryoji Sekine, Daisuke Kiga and Masayuki Yamamura
    "Towards control of a synthetic biological system"
    (Synthetic Biology 5.0, Stanford, June, 2011)
  • Ryoji Sekine, Masayuki Yamamura, Shotaro Ayukawa, Satoru Akama, Masahiro Takinoue, Masami Hagiya and Daisuke Kiga
    "Tunable phenotypic diversity by a synthetic genetic circuit through autonomous signaling on Waddington's landscape"
    (Synthetic Biology 5.0, Stanford, June, 2011)
  • Toshikazu Taki, Ken Komiya and Masayuki Yamamura (Selected for oral presentation)
    "Autonomous Restoration of a DNA Track for a Sustained Walk of a DNA Walking Device Driven by Nicking Reaction"
    (Absrtracts for 8th Annual Conference on Foundation of Nanoscience (FNANO11),pp. 22-23, Snowbird, April 2011)

2010

  • Ken Komiya, Masayuki Yamamura and John A. Rose (Poster)
    "Operational Design, Tuning, and Experimental Validation of a Single-Molecule Tristate DNA Nanodevice"
    (Proc. of 16th International Meeting on DNA Based Computers (DNA16),pp. 207-208, Hong Kong, June 2010)

2009

  • Ken Komiya, Masayuki Yamamura and John A. Rose
    "Experimental Validation of Signal Dependent Operation in Whiplash PCR"
    (Lecture Notes in Computer Science, 2009, Vol. 5347, pp. 1-10)

2008

  • Ken Komiya, Masayuki Yamamura and John A. Rose (Full paper, selected for oral presentation)
    "Experimental Validation of Signal Dependent Operation in Whiplash PCR"
    (Proc. of 14th International Meeting on DNA Based Computers (DNA14), pp. 57-67, Prague, June 2008)
  • Masafumi Fuita, Ken Komiya and Masayuki Yamamura
    "Synthetic Nicking Reaction for A Programmed Walk by A Multi-legged DNA Walking Device"
    (Proc. of 14th International Meeting on DNA Based Computers (DNA14), pp. 180, Prague, June 2008)
  • Masayuki Yamamura, (Invited talk)
    “CYBOware: towards an open-source approach for synthetic biology,”
    Biomathematical Computing Conference, 2008.10.31-11.2 SUNY Binghamton, 2008.04.

2007

  • Masafumi Fuita, Ken Komiya and Masayuki Yamamura (Poster)
    "Experimental Analysis for a Multi-legged DNA Walking Device That Moves in an Autonomous and Programmable Way"
    (Proc. of 2nd International Workshop on Natural Computing (IWNC 2007), Nagoya, December 2007)
  • Masayuki Yamamura, Ken Komiya and Noriko Hirayama (Full paper, oral)
    "An Implementation of Aqueous Memory Molecules with Light Responsive DNAs"
    (Proc. of 2007 IEEE Congress on Evolutionary Computation (CEC2007), pp. 1843-1848, Singapore, September 2007)
  • Ken Komiya, Noriko Hirayama, and Masayuki Yamamura (Full paper, selected for oral presentation)
    "An Interface for a Computing Model Using Methylation to Allow Precise Population Control by Quantitative Monitoring"
    (Proc. of Thirteenth International Meeting on DNA Based Computers (DNA13), pp. 180-190, Memphis, June 2007)
    (Lecture Notes in Computer Science, 4848: 191-200, 2008)
  • Hiroyuki Sekiguchi, Ken Komiya, Daisuke Kiga and Masayuki Yamamura (Full paper, selected for oral presentation)
    "A realization of DNA molecular machine that walks autonomously by using a restriction enzyme"
    (Proc. of Thirteenth International Meeting on DNA Based Computers (DNA13), pp. 91-100, Memphis, June 2007)
  • Hiroyuki Sekiguchi, Ken Komiya, Daisuke Kiga and Masayuki Yamamura
    "A realization of DNA molecular machine that walks autonomously by using a restriction enzyme"
    (Proc. of 13th International Meeting on DNA Based Computers (DNA13),91-100 June 2007)
    (Lecture Notes in Computer Science, 4848: 54-65, 2008)
  • Masayuki Yamamura, Ken Komiya and Noriko Hirayama
    "An Implementation of Aqueous Memory Molecules with Light Responsive DNAs"
    (Proc. of 2007 IEEE Congress on Evolutionary Computation (CEC2007), 1843-1848, September 2007)

2006

  • Ken Komiya, Satsuki Yaegashi, Masami Hagiya and John A. Rose (Poster)
    "Experimental Validation of the Statistical Thermodynamic Model for Prediction of the Behavior of a Hairpin-forming DNA Machine"
    (Proc. of 15th East Asian Biophysics Symposium & Forty-Fourth Annual Meeting of the Biophysical Society of Japan (EABS & BSJ 2006), Okinawa, November 2006)
  • T Kimura, Y Sakuraba, H Noguchi, H Masuya, H Sezutsu, KR Takahasi, A Toyoda, Y Sakaki, R Fukumura, T Murata, N Fujimot, R Motoi, M Yamamura, S Wakana, T Noda, T Shiroishi, Y Gondo:
    LCNS(Long Conserved Noncoding Sequences,
    IMGC (International Mammalian Genome Conference), Francis Marion Hotel, 387 King Street, Charleston, 29403, South Carolina, USA, 2006年11月12-15日
  • Hiromi Arai,Masayuki Yamamura: Predicting protein disordered region from classified data,
    EABS&BSJ2006(Fifth East Asian Biophysics Symposium & Forty-Fourth
    Annual Meeting of the Biophysical Society of Japan), pp.475 (2006).
  • Ken Komiya, Satsuki Yaegashi, Masami Hagiya, Akira Suyama and John A. Rose,
    Experimental Validation of the Statistical Thermodynamic Model for Prediction of the Behavior of Autonomous Molecular Computers Based on DNA Hairpin Formation,
    Proc. of 12th International Meeting on DNA Based Computers (DNA12), June 2006,
    Lecture Notes in Computer Science, 4287: 428-438, 2006
  • John A. Rose, Ken Komiya, Satsuki Yaegashi and Masami Hagiya,
    Displacement Whiplash PCR: Optimized architecture and experimental validation,
    Proc. of 12th International Meeting on DNA Based Computers (DNA12), June 2006,
    Lecture Notes in Computer Science, 4287: 393-403, 2006
  • Tomohiro Suzuki, Ken Komiya and Satoshi Murata (Poster)
    "Reversible Signal Amplification by Linear Hybridization Chain Reaction"
    (Proceedings of Twelfth International Meeting on DNA Based Computers (DNA12), pp. 418, Seoul, June 2006)

2005

  • Shigeo DOI and Masayuki YAMAMURA,
    Congestion Detection and Clearing History of Trip Time in AntNet,
    Proceeding os IEEE Congress on Evolutionary Computation (CEC2005), pp.1621-1628 (Mar.2005)
  • Satoshi Kira, Masayuki Yamamura and Seiki Kuramitsu:
    Predicting the Expression Levels of Recombinant Protein by using Reinforcement Learning,
    Proc. of the 8th IASTED International Conference on Intelligence Systems and Control (ISC2005), pp.471-476 (Mar.2005).

2004

  • Shigeo DOI and Masayuki YAMAMURA,
    An Experimental Analysis of Loop-Free Algorithms for Scale-free Networks,
    Proc. 4th International Workshop on Ant Colony Optimization and Swarm Intelligence (ANTS2004), Lecture Notes in Computer Science 3172: pp.278-285, Sep.2004.
  • Shigeo DOI and Masayuki YAMAMURA,
    AntNet and Relative Pheromone Evaporation,
    Proc. EEE 4th International Conference on Intelligent Systems Design and Applications (ISDA2004), pp.473-478, Sep.2004.
  • Wakabayashi K., Yamamura M.:
    A design for cellular evolutionary computation by using bacteria,
    Preliminary Proceedings of 10th International meeting on DNA based computers (DNA10), 304-313 (June.2004).
  • Sakamoto K., Yamamura M., Someya H.:
    Toward “Wet” Implementation of Genetic Algorithm for Protein Engineering,
    Preliminary Proceedings of 10th International meeting on DNA based computers (DNA10), 416-425 (June.2004).
  • Shinno K., Yamamura M.:
    An implementation of Molecule Reinforcement Learning,
    Preliminary Proceedings of 10th International meeting on DNA based computers (DNA10), 432-432 (June.2004).
  • Shigeo DOI, Masayuki YAMAMURA,
    An Experimental Analysis of Loop-Free Algorithms for Scale-free Networks,
    Proc. 4th International Workshop on Ant Colony Optimization and Swarm Intelligence (ANTS2004),
    Lecture Notes in Computer Science 3172: 278-285, September 2004.
  • Shigeo DOI, Masayuki YAMAMURA,
    AntNet and Relative Pheromone Evaporation,
    Proc. IEEE 4th International Conference on Intelligent Systems,
    Design and Applications (ISDA2004), 473-478, August 2004.

2003

  • Sung-Joon Park, Masayuki Yamamura,
    GA-based Generic Method for Protein Structure Comparison,
    Proc. 2003 Congress on Evolutionary Computation (CEC 2003), 1528-1535, Dec. 2003
  • Fumihide Tanaka, Masayuki Yamamura,
    Exploiting Value Statistics for Similar Continuing Tasks,
    12th IEEE Workshop Robot and Human Interactive Communication (RO-MAN 2003), San Francisco, November 2003
  • Sung-Joon Park, Masayuki Yamamura,
    Two-layer Protein Structure Comparison,
    Proc. 15th IEEE International Conference on Tools with Artificial Intelligence (ICTAI 2003), 435-440, Nov. 2003
  • Sung-Joon Park, Masayuki Yamamura,
    Asynchronous Real-coded Genetic Algorithms for Simultaneous Protein Structure-based Alignment,
    Proc. GECCO2003: Proceedings of the Bird of a Feather Workshops, 276-279, 2003
  • Fumihide Tanaka, Masayuki Yamamura,
    Multitask Reinforcement Learning on the Distribution of MDPs,
    Proc. IEEE International Conference in Robotics and Automation (CIRA2003), 2003
  • Sung-Joon Park, Masayuki Yamamura,
    Real-Coded Genetic Algorithm to Reveal Biological Significant Sites of Remotely Homologous Proteins,
    Proc. GECCO2003, 1602-1603, 2003

2002

  • Hiroshi Someya, Masayuki Yamamura,
    Robust Evolutionary Algorithms with Toroidal Search Space Conversion for Function Optimization,
    Proc. GECCO2002, 553-560, 2002
  • Atsushi Kajita, Masayuki Yamamura, Yuji Kohara,
    Physical Modeling of the Cellular Arrangement in C. elegans Early Embryo: Effect of Rounding and Stiffening of the Cells,
    Genome Informatics, 13:224-232, 2002
  • Sung-Joon Park, Masayuki Yamamura,
    FROG (Fitted Rotation and Orientation of protein structure by means of real-coded Genetic algorithm) : asynchronous parallelizing for protein structure-based comparison on the basis of geometrical similarity,
    Genome Informatics, 13:344-345, 2002

2001

  • Hiroshi Someya, Masayuki Yamamura,
    Genetic Algorithm with Search Area Adaptation for the Function Optimization and its Experimental Analysis,
    Proc. CEC2001, 933-940, 2001
  • Fumihide Tanaka, Masayuki Yamamura,
    Skill Knowledge Assimilation by Reinforcement Learning Agent,
    Proc. 6th SIGART/AAAI Doctoral Consortium in IJCAI-01, 2001
  • Masayuki Yamamura, Yusuke Hiroto, Taku Matoba,
    Another Realization of Aqueous Computing with Peptide Nucleic Acid,
    7th International Workshop on DNA-Based Computers (DNA7), LNCS2340: 213-222, 2001
  • Kenichi Wakabayashi, Masayuki Yamamura,
    A Realization of Information Gate by Using Enterococcus faecalis Pheromone System,
    7th International Workshop on DNA-Based Computers (DNA7), LNCS2340: 269-378, 2001
  • Hiroshi Someya, Masayuki Yamamura,
    Toroidal Search Space Conversion for Robust Real-coded Genetic Algorithms,
    Proc. GECCO-2001, 782, 2001

2000

  • Masayuki Yamamura, Yoshiyuki Ito,
    A Case Study of Indirect Control on Large Scale Evolutionary Multi-agent Systems in Dynamic Environment,
    Proc. the 6th International Conference on Intelligent Autonomous Systems (IAS-6), 219-224, 2000
  • Sung-Joon Park, Masayuki Yamamura,
    An Approach to Structural Alignment with Genetic Algorithm,
    Proc. the 2nd International Conference on BGRS, 2:201-203, 2000
  • Takahide Higuchi, Shigeyoshi Tsutsui, Masayuki Yamamura,
    Theoretical Analysis of Simplex Crossover for Real-Coded Genetic Algorithms,
    Proc. the Parallel Problem Solving from Nature (PPSN 2000), 365-374, 2000
  • Hiroshi Someya, Masayuki Yamamura,
    Where should Children be Generated by Crossover Operator on Function Optimization?,
    Proc. GECCO-2000, 382, 2000

1999

  • Shigeyoshi Tsutsui, Masayuki Yamamura, Takahide Higuchi,
    Multi-parent Recombination with Simplex Crossover in Real Coded Genetic Algorithms,
    Proc. GECCO-99, 657-664, 1999
  • Hiroshi Someya, Masayuki Yamamura,
    A Genetic Algorithm without Parameters Tuning and its Application on the Floorplan Design Problem,
    Proc. the GECCO-99, 620-627, 1999
  • Tom Head, Masayuki Yamamura, Susannah Gal,
    AQUEOUS COMPUTING: Writing on Molecules,
    Proc. the Congress on Evolutionary Computation, 2:1006-1010, 1999

1991-1997

  • Fumihide Tanaka, Masayuki Yamamura,
    An approach to Lifelong Reinforcement Learning through Multiple Environments,
    Proc. Sixth European Workshop on Learning Robots (EWLR-6), 1997
  • Masayuki Yamamura, Isao Ono, Shigenobu Kobayashi,
    Emergent Search on Double Circle TSPs Using Subgour Exchange Crossover,
    Proc. International Conference on Evolutionary Computation, 535-540, 1996
  • Koji Yoshida, Masayuki Yamamura, Shigenobu Kobayashi,
    Generating Pareto Optimal Decision Trees by GAs,
    Proc. the 4th International Conference on Soft Computing (IIZUKA'96), 854-859, 1996
  • Hajime Kimura, Masayuki Yamamura, Shigenobu Kobayashi,
    Reinforcement learning by stochastic hill climbing on discounted reward,
    Proc. 12th International Conference on Machine Learning, 295-303, 1995
  • Masayuki Yamamura, Hiroshi Satoh, Shigenobu Kobayashi,
    An Analysis of Crossover's Effect in Genetic Algorithms,
    Proc. International Conference on Evolutionary Computation, 613-618, 1994
  • Masayuki Yamamura, Shigenobu Kobayashi,
    An Augmented EBL and its Application to the Utility Problem,
    Proc. International Joint Conference on Artificial Intelligence (IJCAI), 623-629, 1991