Journals and Writings

Invited Paper

Daisuke Kiga and Masayuki Yamamura:
Synthetic Biology, Tutorial on Programming Natural Systems:
Part2. Programming Cells, New Generation Computing, Vol.26, No.4, pp.347-364 (2008.04).

International Journals and Writings

Lingfeng Sang, Masayuki Yamamura, Fangyan Dong, Zhongxue Gan, Jianzhong Fu, Hongbo Wang, Yu Tian.
"Analysis, Design, and Experimental Research of a Novel Wheelchair-Stretcher Assistive Robot"
(Applied Sciences 2020, 10, 264; doi:10.3390/app10010264)
Motohiro Akikawa, Masayuki Yamamura.
"Materializing Architecture for Processing Multimodal Signals for a Humanoid Robot Control"
(Journal of Advanced Computational Intelligence and Intelligent Informatics, Vol.25, No.3, pp.335-345, doi: 10.20965/jaciii.2021.p0335)
Syoya Yasuda, Jiping Sun, Yang Zhou, Yanqing Wang, Qing Lu, Masayuki Yamamura, Ji‐Yang Wang.
"Opposing roles of IgM and IgD in BCR‐induced B‐cell survival"
(Genes to Cells, 2018, Vol. 23, No. 10, gtc.12635)
Shuyin Li, Jun Liu, Qing Min, Tomokatsu Ikawa, Syoya Yasuda, Yang Yang, Yan-Qing Wang Takeshi Tsubata, Yaofeng Zhao, Ji-Yang Wang
“Kelch-like protein 14 promotes B-1a but suppresses B-1b cell development”
(International Immunology, 2018, Vol. 30, No. 7, 311-318)
Jun Liu, Ermeng Xiong, Hanying Zhu, Hiromi Mori, Syoya Yasuda, Kazuo Kinoshita, Takeshi Tsubata, Ji-Yang Wang.
“Efficient Induction of Ig Gene Hypermutation in Ex Vivo–Activated Primary B Cells” (The Journal of Immunology 199(9), 3023-3030 (2017))
Xiao Dong, Miao Shi, Moonsook Lee, Rafael Toro, Silvia Gravina, Weiguo Han, Syoya Yasuda, Tao Wang, Zhengdong Zhang, Jan Vijg, Yousin Suh, Simon D. Spivack.
“Global, integrated analysis of methylomes and transcriptomes from laser capture microdissected bronchial and alveolar cells in human lung Epigenetics”
(Epigenetics (2018), https://doi.org/10.1080/15592294.2018.1441650)
Akifumi Nishida, Vera Thiel, Mayuko Nakagawa, Shotaro Ayukawa, and Masayuki Yamamura.
"Effect of light wavelength on hot spring microbial mat biodiversity"
(PLoS One, 2018 13(1): e0191650, https://doi.org/10.1371/journal.pone.0191650)
Yasuda S, Zhou Y, Wang Y, Yamamura M and Wang JY4.
A model integrating tonic and antigen-triggered BCR signals to predict the survival of primary B cells."
(Scientific Reports, 2017, Vol. 7, No. 1, DOI: 10.1038/s41598-017-13993-x)
Ken Komiya and Masayuki Yamamura
"Cascading DNA Generation Reaction for Controlling DNA Nanomachines at a Physiological Temperature"
(New Generation Computing, 2015, Vol. 33, No. 3, to appear)
Ryoji Sekine, Masayuki Yamamura
"Design and control of synthetic biological systems," Proceedings in
Information and Communications Technology, vol. 6, pp. 104-114, 2013
Ryoji Sekine, Daisuke Kiga, Masayuki Yamamura,
"Design strategy for an initial state-independent diversity generator,"
Chem-Bio Informatics Journal 2012 12: 39-49
Ryoji Sekine, Masayuki Yamamura, Shotaro Ayukawa, Kana Ishimatsu, Satoru Akama, Masahiro Takinoue, Masami Hagiya , and Daisuke Kiga:
Tunable synthetic phenotypic diversification on Waddington's landscape through autonomous signaling,
Proceedings of the National Academy of Sciences 2011 108:17969-17973
Ken Komiya, Masayuki Yamamura and John A. Rose:
Experimental Validation and Optimization of Signal Dependent Operation in Whiplash PCR,
Natural Computing, Volume 9, Number 1, 207-218, DOI: 10.1007/s11047-009-9140-1 (2010)
Hiromi Arai; Satoru Watanabe; Takanori Kigawa; Masayuki Yamamura
A new modeling method in feature construction for the HSQC spectra screening problem,
Bioinformatics 2009 25: 948-953
Hiroshi Sekiguchi, Ken Komiya, Daisuke Kiga, Masayuki Yamamura:
A Realization of DNA Molecular Machine that Walks Autonomously by using a Restriction Enzyme,
Lecture Notes on Computer Science 4848 (DNA13), pp.54-65 (2008).
K. Komiya, N. Hirayama, M. Yamamura,
An Interface for a Computing Model Using Methylation to Allow Precise Population Control by Quantitative Monitoring,
Lecture Notes on Computer Science 4848 (DNA13), pp.191-200 (2008).
Hiroshi Sekiguchi, Daisuke Kiga, Ken Komiya, Masayuki Yamamura:
A Design and Feasibility Study of Reactions Comprising DNA Molecular Machine that Walks Autonomously by using a Restriction Enzyme,
Natural Computing, # DOI: 10.1007/s11047-008-9077-9 (2008).
Hiroshi Sekiguchi, Daisuke Kiga, Ken Komiya, Masayuki Yamamura:
A Design and Feasibility Study of Reactions Comprising DNA Molecular Machine that Walks Autonomously by using a Restriction Enzyme,
Natural Computing, Vol.7, No.3, pp.303-315 (2008).
Ken Komiya, Kensaku Sakamoto, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi, Daisuke Kiga, Shigeyuki Yokoyama and Masami Hagiya,
DNA polymerase programmed with a hairpin DNA incorporates a multiple-instruction architecture into molecular computing,
BioSytems, 83: 18-25, 2006
Kenichi Wakabayashi, Masayuki Yamamura,
A Design for Cellular Evolutionary Computation by using Bacteria,
Natural Computing, Vol.4, pp.275-292 (2005).
Kenichi Wakabayashi, Masayuki Yamamura:
A design for cellular evolutionary computation by using bacteria, Rozenberg G and Spaink H.P. (eds)
Natural Computing, (under publication)->2005
Atsushi Kajita, Masayuki Yamamura, Yuji Kohara,
Computer Simulation of the Cellular Arrangement using Physical Model in Early Cleavage of the Nematode Caenorhabditis Elegans,
Bioinformatics, 19(6):704-716, 2003
Masayuki Yamamura, Tom Head, Masami Hagiya,
Biomolecular Computing - Preface,
New Generation Computing, 20(2): 215-216, 2002
Akio Nishikawa, Masayuki Yamamura, Masami Hagiya,
DNA computation simulator based on abstract bases,
Soft Computing, 5(1): 25-44, 2001