雑誌，著作，招待論文，解説

［海外雑誌、著作］

• Lingfeng Sang, Masayuki Yamamura, Fangyan Dong, Zhongxue Gan, Jianzhong Fu, Hongbo Wang, Yu Tian
  "Analysis, Design, and Experimental Research of a Novel Wheelchair-Stretcher Assistive Robot"
  (Applied Sciences 2020, 10, 264; doi:10.3390/app10010264)
  
• Motohiro Akikawa, Masayuki Yamamura
  "Materializing Architecture for Processing Multimodal Signals for a Humanoid Robot Control"
  (Journal of Advanced Computational Intelligence and Intelligent Informatics, Vol.25, No.3, pp.335-345, doi: 10.20965/jaciii.2021.p0335)
  
• 安田翔也, Jiping Sun, Yang Zhou, Yanqing Wang, Qing Lu, Masayuki Yamamura, Ji‐Yang Wang
  "Opposing roles of IgM and IgD in BCR‐induced B‐cell survival"
  (Genes to Cells, 2018, Vol. 23, No. 10, gtc.12635)
• Shuyin Li, Jun Liu, Qing Min, Tomokatsu Ikawa, 安田翔也, Yang Yang, Yan-Qing Wang Takeshi Tsubata, Yaofeng Zhao, Ji-Yang Wang
  “Kelch-like protein 14 promotes B-1a but suppresses B-1b cell development”
  (International Immunology, 2018, Vol. 30, No. 7, 311-318)
• Jun Liu, Ermeng Xiong, Hanying Zhu, Hiromi Mori, 安田翔也, Kazuo Kinoshita, Takeshi Tsubata, Ji-Yang Wang.
  “Efficient Induction of Ig Gene Hypermutation in Ex Vivo–Activated Primary B Cells”
  (The Journal of Immunology 199(9), 3023-3030 (2017))
  
• Xiao Dong, Miao Shi, Moonsook Lee, Rafael Toro, Silvia Gravina, Weiguo Han, 安田翔也, Tao Wang, Zhengdong Zhang, Jan Vijg, Yousin Suh, Simon D. Spivack.
  “Global, integrated analysis of methylomes and transcriptomes from laser capture microdissected bronchial and alveolar cells in human lung Epigenetics”
  (Epigenetics (2018), https://doi.org/10.1080/15592294.2018.1441650)
  
• Akifumi Nishida, Vera Thiel, Mayuko Nakagawa, Shotaro Ayukawa, and Masayuki Yamamura.
  “Effect of light wavelength on hot spring microbial mat biodiversity”
  (PLoS One, 2018 13(1): e0191650, https://doi.org/10.1371/journal.pone.0191650)
  


• Yasuda S, Zhou Y, Wang Y, Yamamura M and Wang JY4.
  “A model integrating tonic and antigen-triggered BCR signals to predict the survival of primary B cells.”
  (Scientific Reports, 2017, Vol. 7, No. 1, DOI: 10.1038/s41598-017-13993-x)
  


• Ken Komiya and Masayuki Yamamura
  “Cascading DNA Generation Reaction for Controlling DNA Nanomachines at a Physiological Temperature”
  (New Generation Computing, 2015, Vol. 33, No. 3, to appear)
  


• Ryoji Sekine, Masayuki Yamamura
  "Design and control of synthetic biological systems," Proceedings in
  Information and Communications Technology, vol. 6, pp. 104-114, 2013
  


• Ryoji Sekine, Daisuke Kiga, Masayuki Yamamura:
  Design strategy for an initial state-independent diversity generator,
  Chem-Bio Informatics Journal 2012 12: 39-49


• Ryoji Sekine, Masayuki Yamamura, Shotaro Ayukawa, Kana Ishimatsu, Satoru Akama, Masahiro Takinoue, Masami Hagiya , and Daisuke Kiga:
  Tunable synthetic phenotypic diversification on Waddington's landscape through autonomous signaling,
  Proceedings of the National Academy of Sciences 2011 108:17969-17973


• Ken Komiya, Masayuki Yamamura and John A. Rose:
  Experimental Validation and Optimization of Signal Dependent Operation in Whiplash PCR,
  Natural Computing, Volume 9, Number 1, 207-218, DOI: 10.1007/s11047-009-9140-1 (2010)


• Hiromi Arai, Satoru Watanabe, Takanori Kigawa, Masayuki Yamamura:
  A new modeling method in feature construction for the HSQC spectra screening problem,
  Bioinformatics 2009 25: 948-953


• Hiroshi Sekiguchi, Daisuke Kiga, Ken Komiya, Masayuki Yamamura:
  A Design and Feasibility Study of Reactions Comprising DNA Molecular Machine that Walks Autonomously by using a Restriction Enzyme,
  Natural Computing, # DOI: 10.1007/s11047-008-9077-9 (2008).


• Ken Komiya, Kensaku Sakamoto, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi, Daisuke Kiga, Shigeyuki Yokoyama and Masami Hagiya,
  DNA polymerase programmed with a hairpin DNA incorporates a multiple-instruction architecture into molecular computing,
  BioSytems, 83: 18-25, 2006


• Kenichi Wakabayashi, Masayuki Yamamura,
  A Design for Cellular Evolutionary Computation by using Bacteria,
  Natural Computing, Vol.4, pp.275-292 (2005).


• Atsushi Kajita, Masayuki Yamamura, Yuji Kohara,
  Computer Simulation of the Cellular Arrangement using Physical Model in Early Cleavage of the Nematode Caenorhabditis Elegans,
  Bioinformatics, 19(6):704-716, 2003


• Masayuki Yamamura, Tom Head, Masami Hagiya,
  Biomolecular Computing - Preface,
  New Generation Computing, 20(2): 215-216, 2002


• Akio Nishikawa, Masayuki Yamamura, Masami Hagiya,
  DNA computation simulator based on abstract bases,
  Soft Computing, 5(1): 25-44, 2001

［国内雑誌、著作］

• 藤堂健世 :
  "最先端のAI の利用と応用",
  人工知能学会誌 Vol. 33 No. 2 pp192-196


• 陣内佑, 藤堂健世 :
  "学生企画「人工知能と職業・失業」",
  日本人工知能学会誌, Vol.32, No.6, pp.889, 11月 2017


• 秋川元宏, 安田翔也, 山村雅幸 :
  "コンピューターは魔法の箱？"シリーズ,
  東京化学同人『現代化学』, 2017年1-6月号（全6回）


• 染谷博司, 山村雅幸, 坂本健作 :
  "分子計算のための一点から開始される探索法",
  人工知能学会論文誌, Vol.22, No.4, pp.405-415, 5月 2007. #DOI: 10.1527/tjsai.22.405. (査読有り)


• 土居茂雄, 山村雅幸:
  局所負荷に基づき エージェントの Loop-Free 移動制約を適切に使い分ける AntNet の提案と評価,
  電子情報通信学会論文誌和文A ５月号, Vol.J90-A, No.5, pp.450-490 (2007.05)


• 吉良聡, 礒合敦, 山村雅幸:
  データマイニング技術を用いた組換えタンパク質の発現量解析,
  人工知能学会誌, Vol.21, No.1, pp.481-491 (2006.01).


• 土居 茂雄, 山村 雅幸:
  リンクの相対負荷とエージェントの移動制約を考慮したフェロモン揮発法の提案と評価,
  電子情報通信学会 B, Vol.J87-B, No.1, pp.48-59 (2004.1).


• 田中文英, 山村雅幸,
  MDP集団の上におけるマルチタスク強化学習,
  電気学会 電子・情報・システム部門誌，2003年5月号, 2003


• Shigeo Doi, Masayuki Yamamura,
  BntNetL and its evaluation on a situation of congestion,
  Electronics and Communications in Japan, 85(9):31-41, 2002


• 染谷博司, 山村雅幸,
  探索オペレータの機能分担を考慮した進化型計算による関数最適化,
  電気学会論文誌C, Vol.122-C, No.3, 363-373, 2002


• 樋口 隆英, 筒井 茂義, 山村 雅幸,
  実数値GAにおけるシンプレクス交叉の提案,
  人工知能学会論文誌,16(3):147-155, 2001


• 染谷博司, 山村雅幸,
  最適解の位置にロバストな実数値GAを実現するToroidal Search Space Conversionの提案,
  人工知能学会論文誌,16(3):333-343, 2001


• 西川明男, 有田正規, John A. Rose, 西川明男, 山村雅幸,
  DNAコンピュータ,
  萩谷昌己, 横森貴編, 培風館, 2001


• 山村 雅幸,
  分子メモリー－アクエアスコンピュー タの分子生物学的実現,
  数理科学, No.445, 39-45, 2000


• 山村 雅幸, Tom Head, Susannah Gal,
  アクエア ス・コンピューティング－分子メモリの計算原理 と分子生物学的実現－,
  北野 宏明編著, 遺伝的ア ルゴリズム４, 第2章, 49-73, 産業図書, 2000


• 土居茂雄, 山村雅幸,
  BntNetLとそのふくそう時における能力の評価,
  電子情報通信学会論文誌, Vol.J83-B, No.12, 1702-1711, 2000


• 山村 雅幸，佐藤 浩，小林重信,
  最小騙し問題を用いた世代交代モデルの解析,
  人工知能学会誌, 13(5):746-756, 1998


• Hajime Kimura, Masayuki Yamamura, Shigenobu Kobayashi,
  Reinforcement Learning in Partially Observable Markov Decision Processes: A Stochastic Gradient Method,
  Journal of Japanese Society for Artificial Intelligence, 11(5):787-794, 1996


• Masayuki Yamamura, Kazuteru Miyazaki, Shigenobu Kobayashi,
  A survey on learning for agents,
  Journal of Japanese Society for Artificial Intelligence, 10(5):683-689, 1995

［招待論文］

• Daisuke Kiga and Masayuki Yamamura:
  Synthetic Biology, Tutorial on Programming Natural Systems:
  Part2. Programming Cells, New Generation Computing, Vol.26, No.4, pp.347-364 (2008.04).

［解説］

• 山村雅幸
  分子メモリと分子機械の実現と利用法、
  高分子, Vol.56, No.12, p.986 (2007.12).


• 木賀大介, 山村雅幸:
  構成的生物学－つくることで理解する生物学－,
  人工知能学会誌, Vol.20, No.6, pp.715-721 (2005.03).


• 山村 雅幸:
  ウエット進化計算,
  別冊「数理科学」分子コンピューティング特集, 24-30 (2004.03).


• Ryoji Sekine, Masayuki Yamamura, Masami Hagiya and Daisuke Kiga
  Tunability of the ratio of cell states after the synthetic diversification by the diversity generator,
  Communicative & Integrative Biology, volume 5, Issue 4